GoldSkulltulas

Hyrule Field: Near Gerudo's Valley there's a Circle of Stones. Smash the red boulder with the hammer and bomb a hole in the ground. Once you're inside, use Din's Fire to burn the Webs.
Hyrule Field: As you leave Kakariko Village turn right and head to a small tree. Put a bomb near it and drop in the hole. The Skulltula is near the ceiling
Kokiri Forest: It's on the back of the Know-It-All-Brother's house Kokiri Forest: Catch a bug in a bottle. Then drop it over the soft soil by the shop and it will popup
Kokiri Forest: In the Back of the Twin's House
Hyrule Castle: Go to the Guard's House (at the market entrance). Roll-over atack the wood crate.
Hyrule Castle: The first tree you see when entering the Castle. Roll-atack it
Hyrule Castle: After passing the guards in Hyrule Castle, swim down the moat to the corner where's a big tree. Play the Songs of the Storms, a hole will open. Drop down and blow up the walls with bombs.
Hyrule Castle: Go to the right of the Castle. There's a stone arch in there. The Skulltulla is on the back.
Lon Lon Ranch: Near Talon's house, in the roof, on his second story window
Lon Lon Ranch: In a tree, near the entrance of the ranch. Roll-atack it.
Lon Lon Ranch: Behind the shed at the edge of the corral
Lon Lon Ranch: North of the stone structure, outside the Ranch
Kakariko Village: On a tree, near the entrance
Kakariko Village: At the construction, in the center of the Town. It's on a Red Brick.
Kakariko Village: On the side where the Guard's son lives
Kakariko Village: On that high tower in the northern part of the town (the only tower, actually ;)
Kakariko Village: The side of the Cursed Family house (the Skulltulas house)
Kakariko Village: On the Wall above the Chicken's Woman House (use the Long/Hookshot to get there, grab to a red roof)
Kakariko Graveyard: On the Southeastern wall
Kakariko Graveyard: Use Bugs on the Soft Soils
Lost Woods: The soft soil two screens left of the first area has one if bugs are used on it
Lost Woods: Use Bugs in the Soft Soil That's R,L,R,L,L
Lost Woods: The magic leaf platform R,L,R,L,L from the entrance leads up to one
Lost Woods: High on the East wall of the maze (near the Sacred Meadow)
Death Mountain Trail: In a cave behind a bombable wall a little ways up the trail.
Death Mountain Trail: Use Bugs at the entrance of the Dodongo's Cavern, in the Soft Soil
Death Mountain Trail: In a small nook above the entrance to Dodonogo's Cavern where the bomb plant was. Destroy the red rock there with the hammer to find it.
Death Mountain Trail: After beating the Fire Temple, go up to where the rocks used to rain down on your head. Smash the red boulders there with the hammer and it's behind one of them
Death Mountain Trail: In a crate just inside the crater (the mountain summit entrance)
Death Mountain Trail: Another soft soil spot in the crater. Use Bolero of Fire to get to the center of the mountain. Use Bugs.
Goron City: Smash a crate on the top floor in a room full of boulders
Goron City: On the side of the small stone platform suspended above the city. (where the Stone of Fire used to be)
Zora's River: In a tree at the mouth of the river.
Zora's River: On the ladder near the Zora's Domain entrance
Zora's River: Just before the section with the waterfall is a bridge in a fairly narrow valley. Look very high on the left wall. You'll need the Longshot.
Zora's River: Ride the magic leaf platform that's at the beginning of the river (assuming you planted the bean as young Link there) and near the beginning of its trip it floats over a high platform with a boulder in the middle of a ring of rocks. Jump off onto this platform. Look high on the South wall and you should see it.
Zora's Domain: High up next to the frozen waterfall
Zora's Fountain: A tree on the small island in the Southeast corner (roll attack)
Zora's Fountain: To the right of the fallen log
Zora's Fountain: Pick up the gray boulder in front of the Faerie's Fountain using the Silver Gauntlets to reveal a hole. Drop down, you'll find one there.